This function is a simple wrapper around the function from the ggm
package with the same name. The only differences are that the order
argument defaults to TRUE
and that it adds a DAG
class for
easy plotting. Typically, one would use define_model_set()
to
create models for use with the phylopath
package.
DAG(..., order = TRUE)
a sequence of model formulae
logical, defaulting to TRUE
. If TRUE
the nodes of the DAG
are permuted according to the topological order. If FALSE
the nodes are
in the order they first appear in the model formulae (from left to right).
For use in the phylopath
package, this should always be kept to TRUE
,
but the argument is available to avoid potential problems with masking the
function from other packages.
An object of classes matrix
and DAG
Supply a formulas for the model as arguments. Formulas should be of the
form child ~ parent`` and describe each path in your model. Multiple children of a single parent can be combined into a single formula:
child ~ parent1 + parent2. Finally, an isolate (unconnected variable) can be included as being connected to itself:
isolate ~ isolate`.