Function reference • phylopath

Top level functions Use these functions to describe, fit, select and average your models.
`define_model_set()`	Define a model set.
`DAG()`	Directed acyclic graphs (DAGs)
`phylo_path()`	Compare causal models in a phylogenetic context.
`average()`	Extract and average the best supported models from a phylogenetic path analysis.
`best()`	Extract and estimate the best supported model from a phylogenetic path analysis.
`choice()`	Extract and estimate an arbitrary model from a phylogenetic path analysis.
`show_warnings()`	Print out warnings from a phylopath analysis.
Plotting
`plot(<DAG>)`	Plot a directed acyclic graph.
`plot(<fitted_DAG>)`	Plot a directed acyclic graph with path coefficients.
`plot_model_set()`	Plot several causal hypothesis at once.
`coef_plot()`	Plot path coefficients and their confidence intervals or standard errors.
Low level functions Use these functions for finer control. These are mostly for internal use.
`est_DAG()`	Add standardized path coefficients to a DAG.
`average_DAGs()`	Perform model averaging on a list of DAGs.
Included datasets
`rhino`	Rhinogrades traits.
`rhino_tree`	Rhinogrades phylogeny.
`cichlids`	Cichlid traits and the evolution of cooperative breeding.
`cichlids_tree`	Cichlid phylogeny.
`red_list`	Data on brain size, life history and vulnerability to extinction
`red_list_tree`	Mammalian phylogeny

Reference